Martin,
I re-did our entire VMware environment with the exception of uninstalling the composer in the protected site (don't want to chance breaking View), otherwise all products were uninstalled and reinstalled, creating self signed certificates using only FQDN. Have all products reinstalled. Made sure to copy the rui.crt from the other site and installed in trusted root (did this for both protected and recovery site). Installed SRM and everything looks good until I try to pair the sites, then I get the attached error about using different certificate methods. When I installed vCenter server, both side prompted for the thumbprint which was accepted.
Ideas???????